Here is the list of top ranked universities of pakistan.

Quaid-i-Azam University, Islamabad
Pakistan Institute of Engineering and Applied Sciences
Aga Khan University, Karachi
University of Agriculture, Faisalabad
University of the Punjab, Lahore
National University of Sciences and Technology (NUST)
Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi
University of Health Sciences, Lahore
COMSATS Institute of Information Technology (CIIT), Islamabad
Lahore University of Management Sciences, Lahore

Higher education commission ranks the universities in pakistan.